PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00183.1_g00020.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 280aa    MW: 31497.7 Da    PI: 9.355
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00183.1_g00020.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_153.74.4e-17210258554
                              CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 
                              +r++r++kNRe+A rsR+RK+a++ eLe kv +Le+eN++L+ +l+e +k
  Rsa1.0_00183.1_g00020.1 210 RRQKRMIKNRESAARSRARKQAYTHELEIKVSSLEEENEKLR-RLKEVEK 258
                              79***************************************9.8887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.2E-15202252No hitNo description
SMARTSM003383.8E-11206262IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.174208252IPR004827Basic-leucine zipper domain
PfamPF001708.1E-14210252IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.06E-10210252No hitNo description
CDDcd147074.08E-22210255No hitNo description
PROSITE patternPS000360213228IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MGSLRGNIEE PISQSLPRQN SLYSLKLHEV QTHLGSSAKP LGSMNLDELL KSVWSAEANQ  60
PPEATEAGLS RQGSLTLPRG LSKKTVNEVW RDIQQDKNGS IDNPHGERID SNNNNNKQPT  120
LGEITLEDLL LKAGVVTEAI VPQNVVNVAS NGQWFQYPQH QHQGFMPYPV CEMQEMVSPM  180
NMMMGDVPQA HGRKRVAPSG GDIVEKVVER RQKRMIKNRE SAARSRARKQ AYTHELEIKV  240
SSLEEENEKL RRLKEVEKIL PSEPPPDPKW KLRRTSSASF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3342091e-125AF334209.1 Arabidopsis thaliana bZIP protein DPBF4 mRNA, complete cds.
GenBankAY0846681e-125AY084668.1 Arabidopsis thaliana clone 114632 mRNA, complete sequence.
GenBankBT0251751e-125BT025175.1 Arabidopsis thaliana At2g41070 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013634791.11e-178PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 3 isoform X1
RefseqXP_013688656.11e-178PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 3
SwissprotQ9C5Q21e-141AI5L3_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 3
TrEMBLA0A0D3BP081e-178A0A0D3BP08_BRAOL; Uncharacterized protein
STRINGBra004597.1-P1e-175(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18842883
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41070.31e-129bZIP family protein