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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00183.1_g00020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bZIP | ||||||||
Protein Properties | Length: 280aa MW: 31497.7 Da PI: 9.355 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 53.7 | 4.4e-17 | 210 | 258 | 5 | 54 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 +r++r++kNRe+A rsR+RK+a++ eLe kv +Le+eN++L+ +l+e +k Rsa1.0_00183.1_g00020.1 210 RRQKRMIKNRESAARSRARKQAYTHELEIKVSSLEEENEKLR-RLKEVEK 258 79***************************************9.8887776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 3.2E-15 | 202 | 252 | No hit | No description |
SMART | SM00338 | 3.8E-11 | 206 | 262 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.174 | 208 | 252 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 8.1E-14 | 210 | 252 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.06E-10 | 210 | 252 | No hit | No description |
CDD | cd14707 | 4.08E-22 | 210 | 255 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 213 | 228 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MGSLRGNIEE PISQSLPRQN SLYSLKLHEV QTHLGSSAKP LGSMNLDELL KSVWSAEANQ 60 PPEATEAGLS RQGSLTLPRG LSKKTVNEVW RDIQQDKNGS IDNPHGERID SNNNNNKQPT 120 LGEITLEDLL LKAGVVTEAI VPQNVVNVAS NGQWFQYPQH QHQGFMPYPV CEMQEMVSPM 180 NMMMGDVPQA HGRKRVAPSG GDIVEKVVER RQKRMIKNRE SAARSRARKQ AYTHELEIKV 240 SSLEEENEKL RRLKEVEKIL PSEPPPDPKW KLRRTSSASF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF334209 | 1e-125 | AF334209.1 Arabidopsis thaliana bZIP protein DPBF4 mRNA, complete cds. | |||
GenBank | AY084668 | 1e-125 | AY084668.1 Arabidopsis thaliana clone 114632 mRNA, complete sequence. | |||
GenBank | BT025175 | 1e-125 | BT025175.1 Arabidopsis thaliana At2g41070 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013634791.1 | 1e-178 | PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 3 isoform X1 | ||||
Refseq | XP_013688656.1 | 1e-178 | PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 3 | ||||
Swissprot | Q9C5Q2 | 1e-141 | AI5L3_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 3 | ||||
TrEMBL | A0A0D3BP08 | 1e-178 | A0A0D3BP08_BRAOL; Uncharacterized protein | ||||
STRING | Bra004597.1-P | 1e-175 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1884 | 28 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41070.3 | 1e-129 | bZIP family protein |